Index

A | B | C | D | E | F | G | I | J | L | M | N | P | S | T

A

adjacency_matrix() (in module CPAC.basc)

B

bandpass_voxels() (in module CPAC.nuisance)

C

calc_blocksize() (in module CPAC.network_centrality)
calc_centrality() (in module CPAC.network_centrality)
calc_corrcoef() (in module CPAC.network_centrality)
calc_cwas() (in module CPAC.cwas)
calc_friston_twenty_four() (in module CPAC.generate_motion_statistics)
calc_median_angle_params() (in module CPAC.median_angle)
calc_residuals() (in module CPAC.nuisance)
calc_target_angle() (in module CPAC.median_angle)
calculate_DVARS() (in module CPAC.generate_motion_statistics)
calculate_FD_J() (in module CPAC.generate_motion_statistics)
calculate_FD_P() (in module CPAC.generate_motion_statistics)
cluster_data() (in module CPAC.network_centrality)
cluster_matrix_average() (in module CPAC.basc)
cluster_timeseries() (in module CPAC.basc)
compute_fisher_z_score() (in module CPAC.sca)
compute_reho() (in module CPAC.reho)
convert_pvalue_to_r() (in module CPAC.network_centrality)
copy_geom() (in module CPAC.easy_thresh)
CPAC.alff (module)
CPAC.basc (module)
CPAC.cwas (module)
CPAC.easy_thresh (module)
CPAC.func_preproc (module)
CPAC.generate_motion_statistics (module)
CPAC.group_analysis (module)
CPAC.median_angle (module)
CPAC.network_centrality (module)
CPAC.nuisance (module)
CPAC.registration (module)
CPAC.reho (module)
CPAC.sca (module)
CPAC.scrubbing (module)
CPAC.seg_preproc (module)
CPAC.timeseries (module)
CPAC.vmhc (module)
create_alff() (in module CPAC.alff)
create_anat_preproc() (in module CPAC.anat_preproc)
create_basc() (in module CPAC.basc)
create_bbregister_func_to_anat() (in module CPAC.registration)
create_cwas() (in module CPAC.cwas)
create_func_preproc() (in module CPAC.func_preproc)
create_group_analysis() (in module CPAC.group_analysis)
create_median_angle_correction() (in module CPAC.median_angle)
create_nonlinear_register() (in module CPAC.registration)
create_nuisance() (in module CPAC.nuisance)
create_register_func_to_anat() (in module CPAC.registration)
create_register_func_to_mni() (in module CPAC.registration)
create_reho() (in module CPAC.reho)
create_resting_state_graphs() (in module CPAC.network_centrality)
create_sca() (in module CPAC.sca)
create_scrubbing_preproc() (in module CPAC.scrubbing)
create_seg_preproc() (in module CPAC.seg_preproc)
create_surface_registration() (in module CPAC.timeseries)
create_target_angle() (in module CPAC.median_angle)
create_temporal_reg() (in module CPAC.sca)
create_vmhc() (in module CPAC.vmhc)
create_wf_apply_ants_warp() (in module CPAC.registration)
create_wf_c3d_fsl_to_itk() (in module CPAC.registration)
create_wf_calculate_ants_warp() (in module CPAC.registration)
create_wf_collect_transforms() (in module CPAC.registration)

D

degree_centrality() (in module CPAC.network_centrality)

E

easy_thresh() (in module CPAC.easy_thresh)
eigenvector_centrality() (in module CPAC.network_centrality)

F

f_kendall() (in module CPAC.reho)
fast_eigenvector_centrality() (in module CPAC.network_centrality)
fristons_twenty_four() (in module CPAC.generate_motion_statistics)

G

gen_motion_parameters() (in module CPAC.generate_motion_statistics)
gen_power_parameters() (in module CPAC.generate_motion_statistics)
gen_roi_timeseries() (in module CPAC.timeseries)
gen_vertices_timeseries() (in module CPAC.timeseries)
gen_voxel_timeseries() (in module CPAC.timeseries)
get_cent_zscore() (in module CPAC.network_centrality)
get_centrality_by_rvalue() (in module CPAC.network_centrality)
get_centrality_by_sparsity() (in module CPAC.network_centrality)
get_centrality_fast() (in module CPAC.network_centrality)
get_idx() (in module CPAC.func_preproc)
get_img_nvols() (in module CPAC.alff)
(in module CPAC.vmhc)
get_img_tr() (in module CPAC.alff)
get_indx() (in module CPAC.scrubbing)
get_mov_parameters() (in module CPAC.scrubbing)
get_N1() (in module CPAC.alff)
get_N2() (in module CPAC.alff)
get_operand_expression() (in module CPAC.vmhc)
get_operand_string() (in module CPAC.alff)
get_operation() (in module CPAC.group_analysis)
get_roi_timeseries() (in module CPAC.timeseries)
get_spatial_map_timeseries() (in module CPAC.timeseries)
get_standard_background_img() (in module CPAC.easy_thresh)
get_tuple() (in module CPAC.easy_thresh)
get_vertices_timeseries() (in module CPAC.timeseries)
get_voxel_timeseries() (in module CPAC.timeseries)
getOpString() (in module CPAC.reho)
group_stability_matrix() (in module CPAC.basc)

I

individual_group_clustered_maps() (in module CPAC.basc)
individual_stability_matrix() (in module CPAC.basc)

J

joint_mask() (in module CPAC.cwas)

L

load() (in module CPAC.network_centrality)

M

map_centrality_matrix() (in module CPAC.network_centrality)
map_to_roi() (in module CPAC.sca)
mdmr() (in module CPAC.cwas)
median_angle_correct() (in module CPAC.median_angle)
motion_power_statistics() (in module CPAC.generate_motion_statistics)

N

ndarray_to_vol() (in module CPAC.basc)
nifti_cwas() (in module CPAC.cwas)
nifti_individual_stability() (in module CPAC.basc)

P

pick_wm_0() (in module CPAC.seg_preproc)
pick_wm_1() (in module CPAC.seg_preproc)
pick_wm_2() (in module CPAC.seg_preproc)
process_segment_map() (in module CPAC.seg_preproc)

S

set_frames_ex() (in module CPAC.generate_motion_statistics)
set_frames_in() (in module CPAC.generate_motion_statistics)
set_gauss() (in module CPAC.vmhc)
set_op1_str() (in module CPAC.alff)
set_op_str() (in module CPAC.alff)
standard_bootstrap() (in module CPAC.basc)

T

takemod() (in module CPAC.alff)
timeseries_bootstrap() (in module CPAC.basc)