Version 1.8.2 Beta (Dec 02, 2021)ΒΆ
Usability testing and optimization for the following minimal processing pipelines employed in the Li et al., Milham manuscript (BioRxiv) is complete and they are available:
CPAC:CCS
CPAC:ABCD-BIDS
CPAC:fMRIPrep
CPAC:Default
The ABCD-BIDS surface-based postprocessing pipeline is implemented, though final usability testing and optimization is pending and will be in next release.
Added
Added FSL-TOPUP as an option for distortion correction.
Added changelog
Added CHD8 mouse template (
/cpac_templates/chd8_functional_template_noise_mask_ag.nii.gz
)Added commandline flags
--T1w_label
and--bold_label
Added the ability to ingress an entire FreeSurfer output directory to bypass surface analysis if already completed elsewhere
Added AFNI and Nilearn implementations of Pearson and partial correlation matrices
Changed
Expanded meta-data ingress for EPI field maps to include more fields when parsing BIDS sidecar JSONs.
Updated possible inputs for T2w processing and ACPC-alignment blocks to increase the modularity of these pipeline options.
master
branch renamedmain
Packaged templates in https://github.com/FCP-INDI/C-PAC_templates
Deprecated
master
branch name (renamedmain
)
Fixed
Fixed bug in which the preprocessed T2w data would not be found in the resource pool when expected.
Fixed bug in which distortion correction-related field map ingress would raise
IndexError: list index out of range
when ingressing the field maps.Fixed bug in which some nodes would raise
KeyError: 'in_file'
when estimating memory allocationImproved memory management for multi-core node allocation.
Fixed bug where
--participant_label [A B C]
would skip first and last labels (A
andC
).Stripped the ABI tag note (which was preventing the library from loading dynamically on some host operating systems) from
libQt5Core.so.5
in the ABCD-HCP variant image.Fixed an issue blocking non-C-PAC output data from being read in without sidecar meta-data.