Version 1.8.2 Beta (Dec 02, 2021)ΒΆ

  • Usability testing and optimization for the following minimal processing pipelines employed in the Li et al., Milham manuscript (BioRxiv) is complete and they are available:

    • CPAC:CCS

    • CPAC:ABCD-BIDS

    • CPAC:fMRIPrep

    • CPAC:Default

  • The ABCD-BIDS surface-based postprocessing pipeline is implemented, though final usability testing and optimization is pending and will be in next release.

Added

  • Added FSL-TOPUP as an option for distortion correction.

  • Added changelog

  • Added CHD8 mouse template (/cpac_templates/chd8_functional_template_noise_mask_ag.nii.gz)

  • Added commandline flags --T1w_label and --bold_label

  • Added the ability to ingress an entire FreeSurfer output directory to bypass surface analysis if already completed elsewhere

  • Added AFNI and Nilearn implementations of Pearson and partial correlation matrices

Changed

  • Expanded meta-data ingress for EPI field maps to include more fields when parsing BIDS sidecar JSONs.

  • Updated possible inputs for T2w processing and ACPC-alignment blocks to increase the modularity of these pipeline options.

  • master branch renamed main

  • Packaged templates in https://github.com/FCP-INDI/C-PAC_templates

Deprecated

  • master branch name (renamed main)

Fixed

  • Fixed bug in which the preprocessed T2w data would not be found in the resource pool when expected.

  • Fixed bug in which distortion correction-related field map ingress would raise IndexError: list index out of range when ingressing the field maps.

  • Fixed bug in which some nodes would raise KeyError: 'in_file' when estimating memory allocation

  • Improved memory management for multi-core node allocation.

  • Fixed bug where --participant_label [A B C] would skip first and last labels (A and C).

  • Stripped the ABI tag note (which was preventing the library from loading dynamically on some host operating systems) from libQt5Core.so.5 in the ABCD-HCP variant image.

  • Fixed an issue blocking non-C-PAC output data from being read in without sidecar meta-data.