Latest Release: Version 1.8.3 Beta (Feb 11, 2022)ΒΆ

New features

  • Added XCP-style quality control file

  • Added RBC-options pipeline preconfiguration

  • Added engine.log (when verbose debugging is on)

  • Added ability to fix random seed for

    • antsAI

    • antsRegistration

    • Atropos (fixed but not specified)

    • fslmaths

    • mri_vol2vol

    • recon-all

  • Added ability to use lateral ventricles mask in place of cerebrospinal fluid mask when when segmentation is Off, specifically for the rodent pipeline, but works on any dataset when segmentation is off

Improvements

  • In a given pipeline configuration, segmentation probability maps and binary tissue masks are warped to template space, and those warped masks are included in the output directory

    • if registration_workflows['functional_registration']['EPI_registration']['run segmentation'] is On and segmentation['tissue_segmentation']['Template_Based']['template_for_segmentation'] includes EPI_Template

      and/or

    • if registration_workflows['anatomical_registration']['run'] is On and segmentation['tissue_segmentation']['Template_Based']['template_for_segmentation'] includes T1_Template

  • Renamed connectivity matrices from *_connectome.tsv to *_correlations.tsv

  • Moved some ephemeral logging statements into pypeline.log

Bug fixes

  • Fixed bug in which working connectivity matrix filepaths were generated incorrectly, preventing generating matrices depending on container bindings

  • Fixed broken links in README

  • Fixed bug in which anatomical-only configurations required functional data directories

  • Fixed bug in which nuisance regressors would crash when segmentation is off and no CSF mask is provided